Search  

Select Species
Search Gene Symbols/Aliases and Add in Query Box
Query Box (Up to 10 Gene Symbols)
Examples:     mTOR regulators     Autophagy-Lysosomal    

TFEB GENE PERTURBATION

TIME SERIES (GSE98247)      GP Score   NETWORK TFEB Target          KEGG Autophagy    
Fold Change (log2t/t0) COLOR LEGEND

RRAGC
GENE EXPRESSION PROFILE      FDR        Background Legend  
Genesymbol Experiment FDR Signed Ratio
RRAGCTFEB HeLa - OE (GSE16267) 0.0015841691.676950057
RRAGCTFEB-GFP HeLa - OE (GSE73055) 1.44e-06-1.362631813
RRAGCTFEB-3xFLAG HeLa - OE (GSE73054) 1.05e-05-1.396936467


BIOINFORMATIC PREDICTION OF BINDING SITES

Homo Sapiens (hg19)        Upstream      Downstream      PWM Score  
Genesymbol Score Binding Site Chrom Start End Strand TSS Position Promoter Sequence View
RRAGC0.9741982GGCACGTGACchr13932554939325558--62PromoterIGV


EXPERIMENTAL ChIP-seq

ChIP-seq HEK-293 (GSE98246)      Upstream      Downstream  
Genesymbol Chrom Start End TSS Position View
RRAGCchr139325474393260570IGV
ChIP-seq HeLa (Palmieri et al., HMG 2011 - ChIP-seq Palmieri HMG )
Genesymbol Chrom Start End TSS Position View
RRAGCchr139325313393258530IGV




Copyright © 2020 Tigem. Designed by Diego Carrella in collaboration with Rossella De Cegli
Data produced by Ballabio’s and di Bernardo’s lab

Please cite De Cegli R., Carrella D., et al., TFEBdb: An integrated database of genes regulated by the stress-responsive Transcription Factor EB.

This website is optimized for visualization in a desktop browser using Google Chrome, Mozilla Firefox, Safari, Opera or Microsoft Edge