Search  

Select Species Homo SapiensMus MusculusRattus Norvegicus	Search Gene Symbols/Aliases and Add in Query Box
Query Box (Up to 10 Gene Symbols) RRAGC
Examples:     mTOR regulators     Autophagy-Lysosomal

1 gene found on 1: RRAGC

TFEB GENE PERTURBATION

TIME SERIES (GSE98247)      GP Score   >3ALL			NETWORK	TFEB Target          KEGG Autophagy
Fold Change (log2t/t0)		COLOR LEGEND ■ RRAGC

GENE EXPRESSION PROFILE      FDR   <5%ALL           Background Legend

Genesymbol Experiment FDR Signed Ratio RRAGC TFEB HeLa - OE (GSE16267) 0.001584169 1.676950057 RRAGC TFEB-GFP HeLa - OE (GSE73055) 1.44e-06 -1.362631813 RRAGC TFEB-3xFLAG HeLa - OE (GSE73054) 1.05e-05 -1.396936467

---

BIOINFORMATIC PREDICTION OF BINDING SITES

Homo Sapiens (hg19)        Upstream   2000 1500 1000 500 200 100    Downstream   500 400 300 200 100 0    PWM Score   0.85 0.90 0.95 1      Genesymbol Score Binding Site Chrom Start End Strand TSS Position Promoter Sequence View RRAGC 0.9741982 GGCACGTGAC chr1 39325549 39325558 - -62 Promoter IGV

---

EXPERIMENTAL ChIP-seq

ChIP-seq HEK-293 (GSE98246)      Upstream   1000 5000 2500 1000 300    Downstream   1000 5000 2500 1000 300      Genesymbol Chrom Start End TSS Position View RRAGC chr1 39325474 39326057 0 IGV

ChIP-seq HeLa (Palmieri et al., HMG 2011 - ChIP-seq Palmieri HMG ) Genesymbol Chrom Start End TSS Position View RRAGC chr1 39325313 39325853 0 IGV

Copyright © 2020 Tigem. Designed by Diego Carrella in collaboration with Rossella De Cegli
Data produced by Ballabio’s and di Bernardo’s lab

Please cite: Rossella De Cegli, Diego Carrella, Diletta Siciliano, Gennaro Gambardella, Gennaro Napolitano, Chiara Di Malta, Andrea Ballabio & Diego di Bernardo (2022) TFEBexplorer: An integrated tool to study genes regulated by the stress-responsive Transcription Factor EB, Autophagy Reports, 1:1, 295-305, DOI: 10.1080/27694127.2022.2097822

This website is optimized for visualization in a desktop browser using Google Chrome, Mozilla Firefox, Safari, Opera or Microsoft Edge