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1 gene found on 1: RRAGC TFEB GENE PERTURBATION
TIME SERIES (GSE98247)      GP Score  
    
| | NETWORK      |
TFEB Target          KEGG Autophagy     |
Fold Change (log2t/t0) |
| COLOR LEGEND
■ RRAGC
|
|
BIOINFORMATIC PREDICTION OF BINDING SITES
Homo Sapiens (hg19)    
   Upstream  
   Downstream  
   PWM Score  
    
Genesymbol |
Score |
Binding Site |
Chrom |
Start |
End |
Strand |
TSS Position |
Promoter Sequence |
View |
RRAGC | 0.9741982 | GGCACGTGAC | chr1 | 39325549 | 39325558 | - | -62 | Promoter | IGV |
|
EXPERIMENTAL ChIP-seq
ChIP-seq HEK-293 (GSE98246)      Upstream  
   Downstream  
    
Genesymbol |
Chrom |
Start |
End |
TSS Position |
View |
RRAGC | chr1 | 39325474 | 39326057 | 0 | IGV |
|
ChIP-seq HeLa (Palmieri et al., HMG 2011 - ChIP-seq Palmieri HMG )
Genesymbol |
Chrom |
Start |
End |
TSS Position |
View |
RRAGC | chr1 | 39325313 | 39325853 | 0 | IGV |
|
Copyright © 2020 Tigem. Designed by Diego Carrella
in collaboration with Rossella De Cegli
Data produced by Ballabio’s and di Bernardo’s lab
Please cite: Rossella De Cegli, Diego Carrella, Diletta Siciliano, Gennaro Gambardella,
Gennaro Napolitano, Chiara Di Malta, Andrea Ballabio & Diego di Bernardo (2022) TFEBexplorer:
An integrated tool to study genes regulated by the stress-responsive Transcription Factor EB,
Autophagy Reports, 1:1, 295-305, DOI: 10.1080/27694127.2022.2097822
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